Abstract
Reconstitution of CMV-specific immunity after transplant remains a primary clinical objective to prevent CMV disease, and adoptive immunotherapy of CMV-specific T cells can be an effective therapeutic approach. Because of viral persistence, most CMV-specific CD8+ T cells become terminally differentiated effector phenotype CD8+ T cells (TEFF). A minor subset retains a memory-like phenotype (memory phenotype CD8+ T cells [TM]), but it is unknown whether these cells retain memory function or persist over time. Interestingly, recent studies suggest that CMV-specific CD8+ T cells with different phenotypes have different abilities to reconstitute sustained immunity after transfer. The immunology of human CMV infections is reflected in the murine CMV (MCMV) model. We found that human CMV– and MCMV-specific T cells displayed shared genetic programs, validating the MCMV model for studies of CMV-specific T cells in vivo. The MCMV-specific TM population was stable over time and retained a proliferative capacity that was vastly superior to TEFF. Strikingly, after transfer, TM established sustained and diverse T cell populations even after multiple challenges. Although both TEFF and TM could protect Rag−/− mice, only TM persisted after transfer into immune replete, latently infected recipients and responded if recipient immunity was lost. Interestingly, transferred TM did not expand until recipient immunity was lost, supporting that competition limits the Ag stimulation of TM. Ultimately, these data show that CMV-specific TM retain memory function during MCMV infection and can re-establish CMV immunity when necessary. Thus, TM may be a critical component for consistent, long-term adoptive immunotherapy success.
Introduction
Latent CMV is present within a large percentage of the population but is effectively controlled by the immune system (1–6). However, in transplant patients, immune suppression can allow CMV reactivations to progress to disease and increase mortality. Despite the advancements of antiviral medications, long-term prevention of CMV disease is dependent on the reconstitution of CMV-specific immunity, which can be achieved through adoptive immunotherapy (5–18).
In adoptive immunotherapy, healthy CMV-seropositive donors provide CMV-specific T cells to an immunosuppressed recipient. Because of the persistent nature of CMV infection, CMV-seropositive donors accumulate large numbers of CMV-specific CD8+ T cells (∼5–10% of the total CD8+ T cells), a process termed “memory inflation” (19–28). Studies in humans and the well-characterized murine CMV (MCMV) model have shown that the majority of inflationary populations are composed of terminally differentiated effector phenotype CD8+ T cells (TEFF) that presumably develop as a result of repeated Ag stimulation and may not possess the proliferative or survival capacity necessary for long-term maintenance of CMV immunity (22, 27, 29–34). Interestingly, however, a fraction of these inflationary T cells retain a memory-like phenotype (memory phenotype CD8+ T cells [TM]), despite sharing epitope specificity and TCR sequences with the TEFF subset (23, 25, 35–37). Studies with other infection models have shown that such a memory phenotype can identify cells that have stem cell–like characteristics (38, 39). If this model holds true for CMV immunity, the CMV-specific TM would be ideal to use in an adoptive immunotherapy setting. Recent evidence supports this hypothesis. In a nonhuman primate model, CMV-specific effector T cells that were expanded in vitro from sorted TM had a superior ability to survive after adoptive transfer (40). Moreover, a human study showed a positive correlation between the presence of CMV-specific TM in a donor transfer and the long-term maintenance of donor-derived cells (41).
The goal of our study was to use the mouse model (MCMV) to directly address the capacity of the CMV-specific TM population to restore long-term CMV-specific immunity after transfer. Importantly, we found that the MCMV-specific TM share a common genetic program with their human CMV (HCMV)–specific counterparts and that these cells could repeatedly restore long-term CMV-specific immunity under a spectrum of transfer scenarios. Our data suggest that adoptive immunotherapy with CMV-specific TM will improve consistency and clinical outcomes in patients at risk for development of CMV disease.
Materials and Methods
Mice
Unless otherwise indicated, C57BL/6 (B6), CD45.1 (B6.SJL-Ptprca Pepcb/BoyJ), Thy1.1 (B6.PL-Thy1a/CyJ), and Rag−/− mice (B6.129S7-Rag1 tm1Mom/J) were purchased from The Jackson Laboratory. OT-I transgenic mice (C57BL/6-Tg[TcraTcrb]1100Mjb/J), also purchased from The Jackson Laboratory, were bred with CD45.1 mice to produce double-positive (CD45.2+/CD45.1+) OT-I mice. All protocols were approved by the Thomas Jefferson University Institutional Animal Care and Use Committee.
Infections
Unless otherwise indicated, mice were infected i.p. with 2 × 105 PFU MCMV strain MW97.01 (42). Mice were considered latently infected at 8 wk postinfection. Rag−/− mice were infected with 5 × 104 PFU MCMV-TK virus (43). OT-I T cell transfer recipients were challenged with 2 × 105 PFU MCMV-SL8, which expresses the SIINFEKL peptide (44, 45).
Tetramer staining, Abs, and FACS analysis
MHC tetramers were provided by the National Institutes of Health Tetramer Core Facility (http://tetramer.yerkes.emory.edu) and have been described previously (27). Staining was performed as described previously (27) with tetramers and the following Abs: [CD8(53-6.7); CD44(IM7); CD27(LG.3A10); CD127(A7R34); KLRG1(2F1); CD62L(MEL-14); CD45.1(A20); CD45.1(104); Thy1.1(OX-7); Thy1.2(30-H12); IFN-γ(XMG1.2); TNF-α(MP6-XT22); CD107a(1D4B)]. In all cases, samples were collected on an LSR II and analyzed with FlowJo software (Tree Star). The gating strategy for phenotypic characterization of tetramer+ CD8+ T cells involved first gating lymphocytes and then singlets. CD8+ cells were gated as frequency of singlets. Tetramer+ cells were identified as a frequency of CD8+ cells. A B8R tetramer (specific for the B8R peptide from Vaccinia) was used as a negative tetramer control. Tetramer+ cells were phenotypically defined by their expression of KLRG1, CD27, CD127, or CD62L.
Adoptive transfers
CD8pos splenocytes from latently infected donors were enriched using EasySep Biotin selection kit (Stemcell Technologies) and biotinylated Abs against RBCs(Ter119), CD4(GK1.5), and CD19(6D5) according to the recommended protocol. Enriched cells were stained to determine the frequency of tetramer+ cells within the enriched fraction and then sorted on either a MoFlo (Dako Cytomation) or an ARIA II (BD Biosciences) cell sorter. Sorted cells were counted, and 5 × 104 cells were transferred via the retro-orbital sinus. Sort purity was analyzed on an LSR II. The number of transferred tetramer-binding CD8+ T cells was estimated using the tetramer frequency within the enriched CD8+ population and the postsort purity analysis. Fold change was calculated as the number of tetramer-binding T cells in the spleen 7 d postchallenge over the total number of tetramer+ cells transferred (assuming 100% engraftment). The gating strategy for analyzing donor cells in the recipients was identical to that described earlier with Abs specific for the relevant congenic marker (CD45.1 or Thy1.2).
For OT-I adoptive transfers, splenocytes from naive mice containing 600 OT-I T cells were transferred. Recipients were challenged with MCMV-SL8. To establish secondary and tertiary populations, we FACS sorted and transferred OT-I TM as described in the legend for Fig. 5 and in Supplemental Fig. 1. After challenge with MCMV-SL8, the frequencies of donor OT-Is were determined in the blood of recipients using the strategy described earlier except that singlets were not identified and OT-I donors were identified by expression of CD45.1 and Vα2.
TM can reinflate after multiple rechallenges. (A) Schematic of experimental design. To establish primary OT-I inflationary populations, we transferred 600 naive OT-I T cells expressing CD45.1 into naive B6 (CD45.2) recipients followed by infection with MCMV-SL8 (i.e., primary challenge). Thirteen weeks later, 6000 TM phenotype primary OT-Is, isolated by FACS sorting, were transferred into new B6 recipients followed by MCMV-SL8 challenge (i.e., secondary challenge). This process was repeated a third time, transferring 3500 TM OT-Is into naive mice and challenging with MCMV-SL8 (i.e., tertiary challenge). (B and C) Representative FACS plot of the donor stain 91 d after tertiary challenge (B) and frequencies of donor OT-Is (relative to total CD8s) in the blood at the indicated time points after tertiary challenge (C). Data were collected from two independent experiments (n = 12 total). Each line represents an individual mouse. (D and E) Phenotypic analyses of the mice described in (B) and (C). Representative FACS plot of the donor stain 30 wk postchallenge. Frequencies are relative to donor CD8. (F and G) Intracellular cytokine staining was performed on splenocytes ∼20 wk after the tertiary challenge. Shown are representative FACS plots of stimulated (with SIINFEKL peptide) and unstimulated cells (F), and the frequencies of IFN-γ+ cells that also express TNF-α and/or CD107a (G). Data were collected from two independent experiments (n = 12). Data are displayed as mean ± SEM.
TM can reinflate after multiple rechallenges. (A) Schematic of experimental design. To establish primary OT-I inflationary populations, we transferred 600 naive OT-I T cells expressing CD45.1 into naive B6 (CD45.2) recipients followed by infection with MCMV-SL8 (i.e., primary challenge). Thirteen weeks later, 6000 TM phenotype primary OT-Is, isolated by FACS sorting, were transferred into new B6 recipients followed by MCMV-SL8 challenge (i.e., secondary challenge). This process was repeated a third time, transferring 3500 TM OT-Is into naive mice and challenging with MCMV-SL8 (i.e., tertiary challenge). (B and C) Representative FACS plot of the donor stain 91 d after tertiary challenge (B) and frequencies of donor OT-Is (relative to total CD8s) in the blood at the indicated time points after tertiary challenge (C). Data were collected from two independent experiments (n = 12 total). Each line represents an individual mouse. (D and E) Phenotypic analyses of the mice described in (B) and (C). Representative FACS plot of the donor stain 30 wk postchallenge. Frequencies are relative to donor CD8. (F and G) Intracellular cytokine staining was performed on splenocytes ∼20 wk after the tertiary challenge. Shown are representative FACS plots of stimulated (with SIINFEKL peptide) and unstimulated cells (F), and the frequencies of IFN-γ+ cells that also express TNF-α and/or CD107a (G). Data were collected from two independent experiments (n = 12). Data are displayed as mean ± SEM.
Intracellular stimulation
CD70 blocking Ab treatment
CD70 Ab blockade was performed as previously described (46), with minor modifications. In brief, mice received either 150 μg anti-CD70(FR70) or control rat IgG2b (both from BioXCell) via the i.p. route. Injections were administered at days −1, 0, and 3 postinfection.
Ab depletions
Ab depletions were performed with Thy1.1(19E12), CD4(GK1.5), and NK1.1(PK136) Abs. A total of 300 μg of each Ab was administered i.p. in PBS. Three subsequent injections of 100 μg of each Ab were given at 7-d intervals.
Microarray
Splenocytes from latently infected mice were costained with tetramers loaded with the antigenic peptides from M38, m139, and IE3 (25) and sorted on a MoFlo (Dako Cytomation) cell sorter. MCMV-specific T cells were identified as CD8+, CD44hi, and tetramer binding, and then further segregated into TM and TEFF subsets by expression of KLRG1 and CD127. Naive CD8+ cells were CD44lo. Total RNA was isolated using the Qiagen RNeasy Plus Kit (Qiagen), quantified on a NanoDrop 2000c Spectrophotometer (Thermo Scientific), and processed at the Microarray Core Facility at Thomas Jefferson University. In brief, 2.5 μg fragmented and biotinylated cDNA was hybridized to Mouse gene 1.0 ST array (Affymetrix). Chips were scanned on an Affymetrix Gene Chip Scanner 3000, and data were analyzed using the R programming language and various packages from Bioconductor (47). The oligo package (48) was used to extract expression data from the Affymetrix CEL files and perform background and RMA normalization (49). Annotation information was added using the mogene10sttranscriptcluster.db (50) package. Probes without valid annotations (7196 of 35,556 probes) were removed before differential expression analysis using the Limma package’s (51) linear modeling and Bayes methods (52). Genes showing upregulation or downregulation of at least 2-fold and p < 0.05 in each of three contrasts (TEFF versus naive, TM versus naive, and TEFF versus TM) were considered for gene set enrichment analysis (GSEA). Microarray data have been deposited in the Gene Expression Omnibus (GEO) database (53) under accession no. GSE61927.
GSEA
Human data for series GSE24151 (54) were retrieved from National Center for Biotechnology Information’s GEO database (53), extracted using Partek Genomics Suite software, version 6.6 (Partek, St. Louis, MO) and curated for input into GSEA software (55) (http://www.broadinstitute.org/gsea). Because the data for GSE24151 have been deposited in GEO as log10 ratios of the reference pool to sample, each value was inverted by multiplying by −1. Gene names in the six mouse gene lists (upregulated or downregulated in each of the three contrasts described earlier) were converted to human names using data from National Center for Biotechnology Information’s HomoloGene database, Release 68 (http://www.ncbi.nlm.nih.gov/homologene). The converted gene lists along with genes specific to the liver and the TCR pathway from the Molecular Signature Database (MSigDB) (55) were analyzed for enrichment in the human data using recommended settings for the GSEA command-line interface.
Results
MCMV-specific inflationary TM populations are stable and share a common transcriptional program with HCMV-specific CD8+ T cells in humans
In the mouse model, MCMV infection of B6 mice results in inflation of select MCMV-specific CD8pos T cells specific for peptides from the viral proteins M38, m139, and IE3 (Fig. 1A) (25, 27, 28). As in humans infected with HCMV, the majority of MCMV-specific inflationary T cells express a TEFF phenotype (often defined as terminally differentiated CD8+ T cell phenotype in humans), whereas only a small fraction express a TM-like phenotype, defined in this article as KLRG1lo/CD27hi and further subdivided into central memory CD8+ T cells (TCM: CD127hi/CD62Lhi) and effector memory CD8+ T cells (TEM: CD127hi/CD62Llo) subsets (Fig. 1A) (22, 23, 27, 29–33, 56). In contrast, noninflationary MCMV-specific CD8pos T cell responses, represented by the response against the viral protein M45, contract after acute infection and are thought to be maintained by homeostatic mechanisms thereafter (Fig. 1A) (25, 27, 57). As expected, noninflators express a predominately memory (TM) phenotype, which also includes both TCM and TEM subsets (Fig. 1A) (23, 27).
The noninflationary and inflationary CD8+ T cell populations retain similar numbers of TM. Cohorts of age-matched B6 mice were infected with MCMV and sacrificed at the indicated time points (n = 4 per time point). Tetramer staining and phenotypic analyses were performed on blood and splenocytes. (A) Frequency of tetramer-binding CD8+ T cells in the blood at indicated time points. The phenotypic analysis shown was performed at 326 d postinfection. TM were identified as CD27hi/KLRG1lo. TCM and TEM were further identified as CD127hi and either CD62Lhi or CD62Llo, respectively. (B) Absolute numbers of KLRG1hi tetramer-binding CD8+ T cells in the spleen. (C) Absolute numbers of TCM and TEM tetramer-binding CD8+ T cells. Data are displayed as mean ± SEM and represent two independent experiments.
The noninflationary and inflationary CD8+ T cell populations retain similar numbers of TM. Cohorts of age-matched B6 mice were infected with MCMV and sacrificed at the indicated time points (n = 4 per time point). Tetramer staining and phenotypic analyses were performed on blood and splenocytes. (A) Frequency of tetramer-binding CD8+ T cells in the blood at indicated time points. The phenotypic analysis shown was performed at 326 d postinfection. TM were identified as CD27hi/KLRG1lo. TCM and TEM were further identified as CD127hi and either CD62Lhi or CD62Llo, respectively. (B) Absolute numbers of KLRG1hi tetramer-binding CD8+ T cells in the spleen. (C) Absolute numbers of TCM and TEM tetramer-binding CD8+ T cells. Data are displayed as mean ± SEM and represent two independent experiments.
It remains unknown whether the constant immune stimulation needed to maintain memory inflation causes a decline of the TM subset within inflationary populations over time. Using infection-matched cohorts, we found that the numbers of TM that were specific for inflationary Ags were stable over time and remarkably similar to the numbers of noninflationary TM, despite great differences between the numbers of inflationary and noninflationary TEFF (Fig. 1B, 1C). Thus, although continuous Ag stimulation maintains memory inflation, the inflationary TM population remains stable.
The MCMV model is well characterized and the T cell responses clearly recapitulate those seen in HCMV-infected people. To determine whether MCMV-specific TM and TEFF share a common transcriptional program with their human counterparts, we sorted MCMV-specific TM (CD44hi/CD127hi/KLRG1lo) and TEFF (CD44hi/CD127lo/KLRG1hi) specific for the M38, m139, and IE3 Ags. Microarray analyses were performed on these cells. Genes that were significantly upregulated or downregulated in TM and TEFF subsets relative to each other or to naive (CD44lo) T cells were mapped to the corresponding human genes and compared with the profiles of HCMV-specific T cells, previously defined by the van Lier group (54) as CD27hi/CD45RAlo (TM) or CD27lo/CD45RAhi (TEFF). The CD27 and CD127 (IL-7Rα) molecules both mark CMV-specific T cells with a memory phenotype in mice and humans (27, 29, 32, 58, 59), and nearly all MCMV-specific KLRG1lo/CD27hi cells (TM) coexpressed CD127 (either TCM or TEM; Fig. 1A). Gene set enrichment analyses (GSEA) were used to measure the overall correlation between the mouse and human gene expression data. As shown in Fig. 2A, genes that distinguished mouse TEFF and TM from each other were highly enriched within the corresponding human data set; that is, genes upregulated specifically in mouse TM relative to mouse TEFF were highly enriched within the genes that distinguish human TM from human TEFF and vice versa. Moreover, relative to naive T cells, mouse genes that were upregulated and downregulated by TEFF or TM were highly enriched within genes that distinguished their human counterparts from human naive T cells (Fig. 2B). The analyzed mouse genes and the core enrichment profiles of each comparison are listed in Supplemental Table I. Importantly, several of these genes corresponded to our sorting parameters and the known phenotypes of TM and TEFF populations. As controls, identical analyses were performed with genes associated with the TCR signaling pathway or liver, and the data exhibited expected patterns (Fig. 2B).
Gene set enrichment analyses reveal significant overlap between the transcriptional profile of CMV-specific T cells in humans and mice. (A) Gene set enrichment was performed as described in 2Materials and Methods. Shown are the enrichment plots for mouse genes that differed in a TEFF versus TM comparison, plotted relative to human TEFF and TM. Values represent the normalized enrichment score (NES) and family-wise error rate (FWER), which estimates the probability of a false-positive NES. (B) Lists of significantly altered mouse genes (2-fold up or down and p < 0.05) were generated for TEFF and TM relative to each other and relative to naive (CD44low) T cells. GSEA analyses were performed with these mouse gene sets relative to each of the indicated human data sets, rank ordered by expression (see 2Materials and Methods). Asterisks indicate FWER-corrected significance to control for multiple testing (*p < 0.05, **p < 0.01, ***p < 0.001).
Gene set enrichment analyses reveal significant overlap between the transcriptional profile of CMV-specific T cells in humans and mice. (A) Gene set enrichment was performed as described in 2Materials and Methods. Shown are the enrichment plots for mouse genes that differed in a TEFF versus TM comparison, plotted relative to human TEFF and TM. Values represent the normalized enrichment score (NES) and family-wise error rate (FWER), which estimates the probability of a false-positive NES. (B) Lists of significantly altered mouse genes (2-fold up or down and p < 0.05) were generated for TEFF and TM relative to each other and relative to naive (CD44low) T cells. GSEA analyses were performed with these mouse gene sets relative to each of the indicated human data sets, rank ordered by expression (see 2Materials and Methods). Asterisks indicate FWER-corrected significance to control for multiple testing (*p < 0.05, **p < 0.01, ***p < 0.001).
Overall, these data show that MCMV- and HCMV-specific T cells share a common genetic program, validating the use of the MCMV model to investigate the function of HCMV-specific T cells. To our knowledge, this is the first direct comparison of MCMV-specific and HCMV-specific T cell gene expression profiles.
The inflationary TM population retains proliferative capacity
To test the proliferative capacity of the TM and TEFF, both populations were sorted from spleens of latently infected B6 mice (>3 mo postinfection) using their differential expression of KLRG1 and CD27. Sorted cells were transferred into naive congenic recipients and rechallenged. The M45- and M38-specific TM proliferated robustly within 7 d after challenge, each expanding almost 1000-fold in the spleen alone, assuming 100% engraftment of the donor cells (Fig. 3A, 3B). In contrast, the M38-specific TEFF population expanded <10-fold in the same period. Importantly, whereas the TEFF donor cells remained exclusively KLRG1hi, the TM donor cells produced large numbers of both TEFF and TM progeny (Fig. 3C). In fact, donor M45- and M38-specific TM were present in the spleen 7 d after challenge at numbers that were ∼50- to 100-fold higher than had been transferred (Fig. 3D, dotted line), indicating expansion of this subset without terminal differentiation. These data show that MCMV-specific TM retain robust proliferative capacity and can produce phenotypically diverse progeny including new TM.
TM dramatically expand 7 d postchallenge and produce both TM and TEFF progeny. Age-matched B6 mice received either TM or TEFF and were challenged with MCMV as described in 2Materials and Methods. Spleens were collected 7 d later for analysis. (A) Representative FACS plots of tetramer+ donors in the spleen 7 d postchallenge. Frequencies in the corner are relative to total CD8+ cells. (B) Fold change of donor cells in the spleen, calculated as described in 2Materials and Methods, 7 d after challenge. Because Ag-specific T cells were not sorted, approximately equal numbers of M38- and M45-specific TM were transferred, but ∼10-fold more M38-specific TEFF were transferred compared with the TM. Because of the extremely low number of M45-specific TEFF transferred and the minimal expansion at day 7, it was not possible to calculate a comparable fold change value for the M45-specific TEFF population. Data collected from two independent experiments (TM: n = 6 total; TEFF: n = 5 total) are shown. Statistical significance was determined by a Student t test (***p < 0.001, ****p < 0.0001). (C) Representative FACS plots of M38-specific CD8+ T cell progeny from either TM or TEFF donors in the spleen at 7 d postchallenge. Frequencies in the corner are relative to M38-specific CD8+ cells. (D) Absolute number of TM and TEFF phenotypic progeny that were produced from TM donors. Data are from the same experiments described in (B). (E) Fold change of donor cells in the spleen after treatment with either isotype control or anti-CD70 Ab. Data were collected 7 d postchallenge and represent two independent experiments (n = 6 total). All graphical data are displayed as mean ± SEM. Statistical significance was determined by a Student t test (***p < 0.001, ****p < 0.0001).
TM dramatically expand 7 d postchallenge and produce both TM and TEFF progeny. Age-matched B6 mice received either TM or TEFF and were challenged with MCMV as described in 2Materials and Methods. Spleens were collected 7 d later for analysis. (A) Representative FACS plots of tetramer+ donors in the spleen 7 d postchallenge. Frequencies in the corner are relative to total CD8+ cells. (B) Fold change of donor cells in the spleen, calculated as described in 2Materials and Methods, 7 d after challenge. Because Ag-specific T cells were not sorted, approximately equal numbers of M38- and M45-specific TM were transferred, but ∼10-fold more M38-specific TEFF were transferred compared with the TM. Because of the extremely low number of M45-specific TEFF transferred and the minimal expansion at day 7, it was not possible to calculate a comparable fold change value for the M45-specific TEFF population. Data collected from two independent experiments (TM: n = 6 total; TEFF: n = 5 total) are shown. Statistical significance was determined by a Student t test (***p < 0.001, ****p < 0.0001). (C) Representative FACS plots of M38-specific CD8+ T cell progeny from either TM or TEFF donors in the spleen at 7 d postchallenge. Frequencies in the corner are relative to M38-specific CD8+ cells. (D) Absolute number of TM and TEFF phenotypic progeny that were produced from TM donors. Data are from the same experiments described in (B). (E) Fold change of donor cells in the spleen after treatment with either isotype control or anti-CD70 Ab. Data were collected 7 d postchallenge and represent two independent experiments (n = 6 total). All graphical data are displayed as mean ± SEM. Statistical significance was determined by a Student t test (***p < 0.001, ****p < 0.0001).
Recent work has shown that interaction between CD27 and its ligand CD70 plays a functional role in the proliferation of MCMV-specific inflationary T cells (46). To test the contribution of this interaction specifically within the TM population, we sorted and transferred TM as described earlier and blocked the CD27–CD70 interaction as described in 2Materials and Methods. Blocking the CD27–CD70 interaction significantly decreased the expansion of the M38- and M45-specific TM 7 d postchallenge by ∼4- to 6-fold (Fig. 3E), which is in line with the impact of CD70 blockade on unsorted (i.e., combined TM and TEFF populations) inflationary T cells (46). These data further suggest that the majority of proliferative potential of inflationary T cells is contained within the minor TM subset. It should be noted that even in the presence of CD70 blockade, the TM population retained a proliferative capacity that was greater than the TEFF population, suggesting that additional pathways contribute to the total proliferative potential of these cells (Fig. 3B, 3E) (M. Quinn and C.M. Snyder, unpublished observations).
The inflationary TM population persists and can repeatedly recapitulate memory inflation
To determine the ability of the TM donor cells to persist long term, we tracked the progeny from TM donor cells in the blood after rechallenge. M38-specific T cells from TM-sorted donors persisted at high frequencies in recipients, whereas the M45-specific donor cells contracted after their initial expansion in the same mice (Fig. 4A, 4B). Despite their initial TM phenotype, the donor M38-specific T cells largely expressed a TEFF phenotype after challenge (Fig. 4C, 4D), consistent with a typical inflationary population. The population as a whole retained its ability produce IFN-γ, TNF-α, and expose CD107a (Fig. 4E, 4F). Importantly, a small portion of donor T cells retained their TM phenotype even after this secondary challenge (Fig. 4C, 4D).
TM reinflate after rechallenge and retain function. Age-matched B6 mice received TM and were challenged with MCMV as in 2Materials and Methods. (A) Representative FACS plots of donor-derived T cells in the blood 126 d postchallenge. (B) Frequencies of tetramer-binding T cells in the blood over time. Data were collected from three independent experiments (n = 17 total). (C) Representative FACS plot of the phenotype of donor-derived, M38-specific T cells in the blood 126 d postchallenge. (D) Frequencies of donor-derived, M38-specific TM and TEFF in the blood over time. Data are from the same experiments described in (B). Each line represents an individual mouse. The square datum point represents a mouse that appeared to lose the donor T cells after day 7 postchallenge, but effectors appeared ∼20 wk after challenge. (E and F) Intracellular cytokine staining was performed on splenocytes 221 d postchallenge. Shown are representative FACS plots of stimulated (with M38 peptide) and unstimulated cells (E), and the frequencies of IFN-γ+ cells that also express TNF-α and/or CD107a (F). Data were collected from a single experiment (n = 5) described earlier. All graphical data are displayed as mean ± SEM.
TM reinflate after rechallenge and retain function. Age-matched B6 mice received TM and were challenged with MCMV as in 2Materials and Methods. (A) Representative FACS plots of donor-derived T cells in the blood 126 d postchallenge. (B) Frequencies of tetramer-binding T cells in the blood over time. Data were collected from three independent experiments (n = 17 total). (C) Representative FACS plot of the phenotype of donor-derived, M38-specific T cells in the blood 126 d postchallenge. (D) Frequencies of donor-derived, M38-specific TM and TEFF in the blood over time. Data are from the same experiments described in (B). Each line represents an individual mouse. The square datum point represents a mouse that appeared to lose the donor T cells after day 7 postchallenge, but effectors appeared ∼20 wk after challenge. (E and F) Intracellular cytokine staining was performed on splenocytes 221 d postchallenge. Shown are representative FACS plots of stimulated (with M38 peptide) and unstimulated cells (E), and the frequencies of IFN-γ+ cells that also express TNF-α and/or CD107a (F). Data were collected from a single experiment (n = 5) described earlier. All graphical data are displayed as mean ± SEM.
To understand whether these persistent TM phenotype donors continued to be functional, we turned to the OT-I transgenic system to facilitate sorting and avoid the possible selection of different T cell clones (Fig. 5A). As shown previously, transferred naive OT-Is undergo inflation and produce both TM and TEFF progeny after primary challenge with SIINFEKL-expressing MCMV-SL8 (45). We sorted the TM phenotype OT-I cells that formed after primary challenge, transferred these cells, and challenged the recipients to establish secondary populations (Supplemental Fig. 1A). As with nontransgenic T cells (Fig. 4), secondary challenge of TM OT-Is induced inflation and TEFF formation, as well as a persistent KLRG1lo population (Supplemental Fig. 1B). These secondary TM were again sorted (Supplemental Fig. 1C), transferred into a third set of naive recipients, and rechallenged. Incredibly, the donor secondary TM population inflated and produced both KLRG1hi and KLRG1lo progeny after this tertiary challenge (Fig. 5B–E).
Repeated acute viral challenges of small numbers of T cells in naive mice drive TEFF differentiation (60–63), and indeed the overall frequency of tertiary inflationary cells that retained a TM phenotype was reduced (Fig. 5E and Supplemental Fig. 1B). However, these tertiary stimulated OT-Is remained functional, producing both IFN-γ and TNF-α, as well as exposing CD107a (Fig. 5F, 5G). These data show that TM specific for inflationary Ags can repeatedly recapitulate memory inflation upon viral challenge and produce functional TEFF and TM progeny.
Memory and effector subsets protect Rag−/− mice
To test the ability of transferred TM to protect against a lethal MCMV challenge, we sorted TM and TEFF populations from latently infected B6 mice as described earlier and transferred them into Rag−/− recipients. One day later, the Rag−/− recipients were challenged with MCMV-TK, which lacks the m157 gene and is therefore resistant to NK-mediated control (43). Both transferred TM and TEFF expanded after the challenge and were sufficient to protect the recipients (Fig. 6A, 6B). In contrast, Rag−/− mice that received no T cell therapy became moribund in 2–4 wk and had to be sacrificed (Fig. 6B). Notably, the TEFF population, which proliferated very poorly in immune-replete mice (Fig. 3), expanded and persisted in immune-deficient hosts for at least 11 wk postchallenge (Fig. 6A, 6B). However, the TEFF responses lacked M45-specific, noninflationary T cells (Fig. 6A). These data show that MCMV-specific TM are capable of protecting immune-deficient mice and producing immune responses with broad specificities.
TM and TEFF protect Rag−/− mice after an acute MCMV challenge. Age-matched Rag−/− mice received either TM or TEFF and were challenged with MCMV-TK as described in 2Materials and Methods. Mice were monitored daily for signs of morbidity (lethargy, raised hair, and shaking) and sacrificed if they displayed clear signs of morbidity. Data were collected from two independent experiments. One experiment was carried out until 77 d postchallenge. A second experiment was censored at 33 d postchallenge. (A) Representative tetramer staining of T cells in Rag−/− that received either TM or TEFF transfers. Data were collected 11 wk postchallenge. Frequencies are relative to total CD8s. (B) Survival curve (n = 7 for control group; n = 7 for TM group; n = 6 for TEFF group). Statistical significance was determined by a log-rank (Mantel–Cox) test (****p < 0.0001).
TM and TEFF protect Rag−/− mice after an acute MCMV challenge. Age-matched Rag−/− mice received either TM or TEFF and were challenged with MCMV-TK as described in 2Materials and Methods. Mice were monitored daily for signs of morbidity (lethargy, raised hair, and shaking) and sacrificed if they displayed clear signs of morbidity. Data were collected from two independent experiments. One experiment was carried out until 77 d postchallenge. A second experiment was censored at 33 d postchallenge. (A) Representative tetramer staining of T cells in Rag−/− that received either TM or TEFF transfers. Data were collected 11 wk postchallenge. Frequencies are relative to total CD8s. (B) Survival curve (n = 7 for control group; n = 7 for TM group; n = 6 for TEFF group). Statistical significance was determined by a log-rank (Mantel–Cox) test (****p < 0.0001).
The TM population can persist long term and respond when necessary
Patients undergoing hematopoietic stem cell transplantation (HSCT) are most susceptible to late-onset (>100 d) reactivating CMV, as opposed to an acute CMV infection (12, 64–66 and reviewed in Ref. 67). Furthermore, transferred CMV-specific T cells will need to compete with host immunity. Therefore, we developed a model to test whether TM and TEFF subsets could respond to viral reactivation after a long delay. To this end, TM and TEFF were sorted from latently infected mice (>3 mo postinfection) and transferred into immune-replete, infection-matched, or naive, congenic recipients differing at the Thy1 locus (Fig. 7A). After the transfer, the latently infected recipients were rested as described in the legend for Fig. 7. Donor T cells did not expand dramatically in any animal after transfer (Supplemental Fig. 2A), supporting our previous conclusion that competition between T cells dictates MCMV-specific T cell expansion (45). Recipient T cells and NK cells were then eliminated in all mice using a mixture of depletion Abs that targeted the host cells (Thy1.1+) but left the donor cells (Thy1.2+) intact (Fig. 7B and Supplemental Fig. 2B). This depletion protocol did not induce detectable viral transcription in any animal as assessed by nested RT-PCR (M. Quinn, T. Moghbeli, and C.M Snyder, unpublished observations), likely because of the presence of antiviral Abs (68). Despite the 9- to 12-wk rest period, MCMV-specific donor TM responded robustly in all infected recipients after host depletion (Fig. 7C, 7D). Importantly, donor TM did not expand to detectable levels in depleted naive recipients (Supplemental Fig. 2C). However, viral challenge of naive mice that received TM donor cells 12 wk previously induced a robust donor response in three of the four animals, indicating that the TM persisted in these mice, even without any Ag (Supplemental Fig. 2C). Thus, Ag rather than homeostatic mechanisms account for the donor TM response in infected recipients.
TM persist in latently infected, immune-replete mice and expand when host immunity is lost. (A) Schematic of experimental design. Age-matched B6 and Thy1.1 mice were infected with 1 × 106 PFU MCMV-Smith. After the establishment of viral latency (>8 wk postinfection), either TM or TEFF from the B6 donors were transferred, as described in 2Materials and Methods, into the latently infected Thy1.1 recipients or into naive Thy1.1 mice. Latently infected recipients were rested for 9–12 wk, whereas the naive recipients were rested for ∼1.5 wk. (B) Ab depletion schedule. (C–E) The presence of tetramer+ donors was analyzed by flow cytometry immediately after the depletion schedule. Data were collected from two independent experiments (n = 6 total). Three mice from each group were depleted 9 wk after the transfer; three mice from each group were depleted 12 wk after transfer. (C) Histograms of donor T cells within each individual recipient. (D) Representative FACS plots of tetramer+ donors immediately following the depletion regimen. (E) Frequency within each individual recipient of each analyzed tetramer as a percent of total donor CD8+ cells. TEFF recipients 3–6 are excluded because they did not have a donor population. (F) Tetramer staining was performed 11 wk after depletion in one experiment described earlier (n = 3).
TM persist in latently infected, immune-replete mice and expand when host immunity is lost. (A) Schematic of experimental design. Age-matched B6 and Thy1.1 mice were infected with 1 × 106 PFU MCMV-Smith. After the establishment of viral latency (>8 wk postinfection), either TM or TEFF from the B6 donors were transferred, as described in 2Materials and Methods, into the latently infected Thy1.1 recipients or into naive Thy1.1 mice. Latently infected recipients were rested for 9–12 wk, whereas the naive recipients were rested for ∼1.5 wk. (B) Ab depletion schedule. (C–E) The presence of tetramer+ donors was analyzed by flow cytometry immediately after the depletion schedule. Data were collected from two independent experiments (n = 6 total). Three mice from each group were depleted 9 wk after the transfer; three mice from each group were depleted 12 wk after transfer. (C) Histograms of donor T cells within each individual recipient. (D) Representative FACS plots of tetramer+ donors immediately following the depletion regimen. (E) Frequency within each individual recipient of each analyzed tetramer as a percent of total donor CD8+ cells. TEFF recipients 3–6 are excluded because they did not have a donor population. (F) Tetramer staining was performed 11 wk after depletion in one experiment described earlier (n = 3).
In marked contrast, after depletion, donor T cells were only detectable in two animals that had received TEFF, and then only at very low frequencies (Fig. 7C, 7D). Control experiments (Supplemental Fig. 3A–C) supported previous work (69), suggesting that the KLRG1-specific Ab did not induce depletion of the transferred TEFF subset. Thus, the failure of TEFF to expand in this setting is not a sorting artifact, but rather the inability to persist and/or expand in response to low amounts of viral Ag.
After expansion, all infected mice that received TM had a donor population specific for multiple epitopes, and the progeny had differentiated to form new TEFF populations (Fig. 7E) (M. Quinn and C.M. Snyder, unpublished observations). Furthermore, the four tetramers used stained only ∼60% of the total donor population in each animal (Fig. 7E), suggesting that the remaining 40% of each donor population contained cells specific for additional MCMV Ags. In contrast, in the two animals in which TEFF donors expanded to detectable levels, each was skewed substantially toward a single inflationary epitope (Fig. 7E). Because these sorted TEFF populations included large numbers of T cells specific for M38, m139, and IE3, this hit-or-miss expansion of donor T cells with select specificities implies that a very small number of non-TEFF may have contaminated the transfer.
In the mice that received TM donor cells, their diverse progeny persisted in recipients for >11 wk after termination of the depletion regimen, even though host immunity had returned (Fig. 7F). These data suggest that TM with inflationary specificities are capable of surviving in an environment with very little or no Ag stimulation and then responding as needed during a period in which the host is immune compromised and viral Ag becomes available.
In total, these data show that protective MCMV-specific TM persist throughout infection, retain superior proliferative function, and can respond to viral Ag as needed, in contrast with the numerically dominant TEFF. Because MCMV-specific TM share a transcriptional program with HCMV-specific TM, our data suggest that TM may be ideal candidates to restore functional immune surveillance in patients at risk for CMV reactivation.
Discussion
Adoptive immunotherapy using CMV-specific CD8pos T cells can be a successful therapeutic strategy for combating CMV reactivations (5–18). However, the majority of CMV-specific CD8+ T cells isolated from healthy donors will express an effector-differentiated phenotype (CD27lo/CD127lo/CD45RAhi/KLRG-1hi/CD57hi) (reviewed in Ref. 70), and in vitro expansion of CMV-specific T cells drives their differentiation toward an effector phenotype (40). We used the MCMV model to show that the ability to restore MCMV immunity is contained almost entirely within the minor TM subset that retains CD27. Although both TM and TEFF protected Rag−/− mice (Fig. 6), humans are unlikely to remain completely immune depleted like Rag−/− mice, and bolus CMV infections are of lesser concern than reactivation after transplantation. The inability of the TEFF population to consistently expand after immune depletion in latently infected hosts suggests that these cells will only be protective under limited conditions. These data support a previous study in humans that correlated the transfer of CD27hi CMV-specific T cells with an increased likelihood of T cell persistence and expansion (41).
To validate the use of the MCMV model, we compared human and mouse MCMV-specific T cells and show for the first time, to our knowledge, that TM and TEFF populations in mice and humans share a common transcriptional profile. The power of the GSEA analysis used for this comparison is that it identifies significant correlations across the entire transcriptional profile, rather than comparing individual genes. Nevertheless, we expect that future studies examining conserved and divergent genetic pathways will reveal significant and relevant information about CMV-specific immunity in mouse and human. These results highlight the usefulness of the MCMV model to: 1) perform CMV-specific CD8+ T cell functional studies that are difficult or impossible to perform in humans, and 2) provide translational insights into novel or improved therapeutic strategies.
Understanding how CMV-specific T cell immunity is maintained is critical for the improvement of CMV adoptive immunotherapy. Persistent Ag stimulation from CMV reactivations results in the majority of inflationary CD8+ T cells developing a TEFF phenotype and function. However, our previous work showed that unsorted inflationary CD8+ T cells, containing primarily TEFF, declined after transfer into congenic, latently infected recipients (27). These data suggest that MCMV-specific TEFF are unable to sustain themselves in an immune-replete environment, even in the presence of Ag. Thus, we proposed that the accumulation of TEFF is the result of continual Ag stimulation of the TM population. Our data show that a small, stable MCMV-specific TM population has strong functional similarities to classical memory T cells that develop after acute infections. For example, the ability to proliferate in response to Ag without terminal differentiation is a hallmark of functional memory T cells (71). In addition to producing differentiated progeny that accumulated after MCMV challenge (Fig. 4D), donor TM also produced TM phenotype progeny that outnumbered the cells transferred (Fig. 3C, 3D) and persisted throughout our observation period (Fig. 4C, 4D). These data suggest that MCMV-specific TM have the ability to replace themselves even while producing differentiated progeny in response to Ag. Importantly, this was true through at least three rounds of stimulation using sorted splenic TM (Fig. 5). Thus, MCMV-specific TM have the capacity to respond repeatedly to viral Ag during this persistent infection and can recapitulate memory inflation.
It is interesting that transferred TM failed to expand in immune-replete, latently infected hosts. Detectable numbers of donor T cells were only evident in one of six mice before immune depletion (Supplemental Fig. 2A). In this case, the donors were not positive for any of the tetramers used in the analyses and made up <1% of the total CD8+ population. However, loss of the host T cell populations led to rapid and robust expansion of donor T cells with diverse specificities and phenotypes in all TM recipients (Fig. 7). The failure of transferred TM to expand in the presence of host MCMV-specific immunity may reflect the relative lack of available Ag during the latent phase of MCMV infection. Indeed, viral reactivations occur in only a fraction of latently infected cells at any given time, and only rarely produce infectious viral particles (72, 73). Moreover, we have found that competition between T cells for access to this limited Ag regulates the expansion of individual T cell clones (45). Thus, the combination of low Ag and large numbers of MCMV-specific T cells in the recipients may have “shielded” the majority of the donor TM from the ongoing infection, an idea we have proposed previously (45, 74). Importantly, MCMV Ag is not required for MCMV-specific TM survival. We have previously shown that MCMV-specific TM divide at a consistent rate with or without Ag (28), and our new data (Supplemental Fig. 2C) show that inflationary TM can survive in naive mice without any Ag. Thus, homeostatic mechanisms can support the inflationary TM population when it does not have access to Ag, which may partially explain the preservation of memory function within the TM subset. Taken together, these data suggest that the highly functional TM population, which can persist without access to Ag, proliferates robustly and produces new TM, as well as more differentiated progeny, upon Ag stimulation.
Overall, our data further support the model that the burden of maintaining memory inflation falls on the functional TM population, which can provide a stable and consistent source of new TEFF progeny whenever needed, over prolonged periods. However, T cell competition for limited Ag appears to prevent the continuous stimulation of most TM. Nonetheless, the TM population is capable of robustly responding if T cell competition is lost, a conclusion with important clinical implications for adoptive immunotherapy. Variations in transplant protocols, patients, and antiviral therapy responses make it difficult to predict and standardize CMV prevention therapies. Our data suggest that the plasticity of the TM population, transferred before any disease develops, may offer a personalized therapy, where the treatment adapts to the conditions of the patient and responds if and when Ag becomes available. Future studies will be needed to explore whether the addition of homeostatic cytokines (e.g., IL-15) or pharmacotherapeutics (e.g., rapamycin) (75) preserves the TM phenotype either in vivo or during in vitro expansion.
Acknowledgements
We thank the Kimmel Cancer Center Flow Cytometry Facility and Animal Facility at Thomas Jefferson University.
Footnotes
This work was supported by a faculty start-up package from the Thomas Jefferson University and National Institutes of Health Grants K22-AI081866 and RO1AI106810 (to C.M.S.).
The online version of this article contains supplemental material.
References
Disclosures
The authors have no financial conflicts of interest.