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Bruce D. Walker
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Journal Articles

Integrated single-cell analysis of multicellular immune dynamics during hyper-acute HIV infection

Samuel W Kazer, Toby P Aicher, Daniel M Muema, Vincent N Miao, Jose Ordovas-Montanes, Carly G K Ziegler, Amber Moodley, Krista L Dong, Zaza M Ndhlovu, Thumbi Ndung’u, Bruce D Walker, Alex K Shalek
Journal: The Journal of Immunology
J Immunol (2020) 204 (1_Supplement): 248.4.
DOI: https://doi.org/10.4049/jimmunol.204.Supp.248.4
Published: 01 May 2020
View article titled, Integrated single-cell analysis of multicellular immune dynamics during hyper-acute HIV infection
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Journal Articles

HIV-infected macrophages evade NK cell-mediated killing while driving inflammation

Kiera Clayton, Heather Stuart, Geetha Mylvaganam, Alonso Villasmil Ocando, Marcela Maus, Bruce D Walker
Journal: The Journal of Immunology
J Immunol (2020) 204 (1_Supplement): 95.7.
DOI: https://doi.org/10.4049/jimmunol.204.Supp.95.7
Published: 01 May 2020
View article titled, HIV-infected macrophages evade NK cell-mediated killing while driving inflammation
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Journal Articles

Differential susceptibility to granzymes drives delayed apoptosis of HIV-infected macrophages and promotes CTL pro-inflammatory cytokine release

Kiera Clayton, David Collins, Farokh Dotiwala, Judy Lieberman, Bruce D Walker
Journal: The Journal of Immunology
J Immunol (2017) 198 (1_Supplement): 78.4.
DOI: https://doi.org/10.4049/jimmunol.198.Supp.78.4
Published: 01 May 2017
View article titled, Differential susceptibility to granzymes drives delayed apoptosis of HIV-infected macrophages and promotes CTL pro-inflammatory cytokine release
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Journal Articles

Role of T cell receptors in suppressing HIV infection in elite controllers

Alok Joglekar, Pedro A Lamothe, Yong Ouyang, Zhe Liu, Bruce D Walker, David Baltimore
Journal: The Journal of Immunology
J Immunol (2016) 196 (1_Supplement): 79.10.
DOI: https://doi.org/10.4049/jimmunol.196.Supp.79.10
Published: 01 May 2016
View article titled, Role of T cell receptors in suppressing HIV infection in elite controllers
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Journal Articles

CD8+ TCR Bias and Immunodominance in HIV-1 Infection

Henrik N. Kløverpris, Reuben McGregor, James E. McLaren, Kristin Ladell, Mikkel Harndahl, Anette Stryhn, Jonathan M. Carlson, Catherine Koofhethile, Bram Gerritsen, Can Keşmir, Fabian Chen, Lynn Riddell, Graz Luzzi, Alasdair Leslie, Bruce D. Walker, Thumbi Ndung’u, Søren Buus, David A. Price, Philip J. Goulder
Journal: The Journal of Immunology
J Immunol (2015) 194 (11): 5329–5345.
DOI: https://doi.org/10.4049/jimmunol.1400854
Published: 01 June 2015
View article titled, CD8<sup>+</sup> TCR Bias and Immunodominance in HIV-1 Infection
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Includes: Supplementary data
Journal Articles

Cutting Edge: Prolonged Exposure to HIV Reinforces a Poised Epigenetic Program for PD-1 Expression in Virus-Specific CD8 T Cells

Ben Youngblood, Alessandra Noto, Filippos Porichis, Rama S. Akondy, Zaza M. Ndhlovu, James W. Austin, Rebeka Bordi, Francesco A. Procopio, Toshiyuki Miura, Todd M. Allen, John Sidney, Alessandro Sette, Bruce D. Walker, Rafi Ahmed, Jeremy M. Boss, Rafick-Pierre Sékaly, Daniel E. Kaufmann
Journal: The Journal of Immunology
J Immunol (2013) 191 (2): 540–544.
DOI: https://doi.org/10.4049/jimmunol.1203161
Published: 15 July 2013
View article titled, Cutting Edge: Prolonged Exposure to HIV Reinforces a Poised Epigenetic Program for PD-1 Expression in Virus-Specific CD8 T Cells
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Includes: Supplementary data
Journal Articles

Aminopeptidase Substrate Preference Affects HIV Epitope Presentation and Predicts Immune Escape Patterns in HIV-Infected Individuals

Shao Chong Zhang, Eric Martin, Mariko Shimada, Sasha Blue Godfrey, Jennifer Fricke, Shirley Locastro, Nicole Y. Lai, Paul Liebesny, Jonathan M. Carlson, Chanson J. Brumme, Oluwatobi Awele Ogbechie, Huabiao Chen, Bruce D. Walker, Zabrina L. Brumme, Daniel G. Kavanagh, Sylvie Le Gall
Journal: The Journal of Immunology
J Immunol (2012) 188 (12): 5924–5934.
DOI: https://doi.org/10.4049/jimmunol.1200219
Published: 15 June 2012
View article titled, Aminopeptidase Substrate Preference Affects HIV Epitope Presentation and Predicts Immune Escape Patterns in HIV-Infected Individuals
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Includes: Supplementary data
Journal Articles

Mosaic HIV-1 Gag Antigens Can Be Processed and Presented to Human HIV-Specific CD8+ T Cells

Zaza M. Ndhlovu, Alicja Piechocka-Trocha, Seanna Vine, Ashley McMullen, Kegakilwe C. Koofhethile, Phillip J. R. Goulder, Thumbi Ndung’u, Dan H. Barouch, Bruce D. Walker
Journal: The Journal of Immunology
J Immunol (2011) 186 (12): 6914–6924.
DOI: https://doi.org/10.4049/jimmunol.1004231
Published: 15 June 2011
View article titled, Mosaic HIV-1 Gag Antigens Can Be Processed and Presented to Human HIV-Specific CD8<sup>+</sup> T Cells
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Journal Articles

PD-1 and CTLA-4 Inhibitory Cosignaling Pathways in HIV Infection and the Potential for Therapeutic Intervention

In Special Collection:
Brief Reviews
Daniel E. Kaufmann, Bruce D. Walker
Journal: The Journal of Immunology
J Immunol (2009) 182 (10): 5891–5897.
DOI: https://doi.org/10.4049/jimmunol.0803771
Published: 15 May 2009
View article titled, PD-1 and CTLA-4 Inhibitory Cosignaling Pathways in HIV Infection and the Potential for Therapeutic Intervention
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Journal Articles

Deficiency of HIV-Gag-Specific T Cells in Early Childhood Correlates with Poor Viral Containment

SiHong Huang, Jacqueline Dunkley-Thompson, YanHua Tang, Eric A. Macklin, Julianne Steel-Duncan, Indira Singh-Minott, Elizabeth G. Ryland, Monica Smikle, Bruce D. Walker, Celia D. C. Christie, Margaret E. Feeney
Journal: The Journal of Immunology
J Immunol (2008) 181 (11): 8103–8111.
DOI: https://doi.org/10.4049/jimmunol.181.11.8103
Published: 01 December 2008
View article titled, Deficiency of HIV-Gag-Specific T Cells in Early Childhood Correlates with Poor Viral Containment
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Journal Articles

Identification of an Evolutionarily Conserved Transcriptional Signature of CD8 Memory Differentiation That Is Shared by T and B Cells

W. Nicholas Haining, Benjamin L. Ebert, Aravind Subrmanian, E. John Wherry, Quentin Eichbaum, John W. Evans, Raymond Mak, Stephen Rivoli, Jennifer Pretz, Jill Angelosanto, John S. Smutko, Bruce D. Walker, Susan M. Kaech, Rafi Ahmed, Lee M. Nadler, Todd R. Golub
Journal: The Journal of Immunology
J Immunol (2008) 181 (3): 1859–1868.
DOI: https://doi.org/10.4049/jimmunol.181.3.1859
Published: 01 August 2008
View article titled, Identification of an Evolutionarily Conserved Transcriptional Signature of CD8 Memory Differentiation That Is Shared by T and B Cells
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Journal Articles

Increased Sequence Diversity Coverage Improves Detection of HIV-Specific T Cell Responses

Nicole Frahm, Daniel E. Kaufmann, Karina Yusim, Mark Muldoon, Can Kesmir, Caitlyn H. Linde, Will Fischer, Todd M. Allen, Bin Li, Ben H. McMahon, Kellie L. Faircloth, Hannah S. Hewitt, Elizabeth W. Mackey, Toshiyuki Miura, Ashok Khatri, Steven Wolinsky, Andrew McMichael, Robert K. Funkhouser, Bruce D. Walker, Christian Brander, Bette T. Korber
Journal: The Journal of Immunology
J Immunol (2007) 179 (10): 6638–6650.
DOI: https://doi.org/10.4049/jimmunol.179.10.6638
Published: 15 November 2007
View article titled, Increased Sequence Diversity Coverage Improves Detection of HIV-Specific T Cell Responses
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Journal Articles

Differential Selection Pressure Exerted on HIV by CTL Targeting Identical Epitopes but Restricted by Distinct HLA Alleles from the Same HLA Supertype

Alasdair Leslie, David A. Price, Pamela Mkhize, Karen Bishop, Almas Rathod, Cheryl Day, Hayley Crawford, Isobella Honeyborne, Tedi E. Asher, Graz Luzzi, Anne Edwards, Christine M. Rosseau, James I. Mullins, Gareth Tudor-Williams, Vas Novelli, Christian Brander, Daniel C. Douek, Photini Kiepiela, Bruce D. Walker, Philip J. R. Goulder
Journal: The Journal of Immunology
J Immunol (2006) 177 (7): 4699–4708.
DOI: https://doi.org/10.4049/jimmunol.177.7.4699
Published: 01 October 2006
View article titled, Differential Selection Pressure Exerted on HIV by CTL Targeting Identical Epitopes but Restricted by Distinct HLA Alleles from the Same HLA Supertype
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Journal Articles

Motif Inference Reveals Optimal CTL Epitopes Presented by HLA Class I Alleles Highly Prevalent in Southern Africa

Isobella Honeyborne, Almas Rathod, Rico Buchli, Dhanwanthie Ramduth, Eshia Moodley, Prinisha Rathnavalu, Senica Chetty, Cheryl Day, Christian Brander, William Hildebrand, Bruce D. Walker, Photini Kiepiela, Philip J. R. Goulder
Journal: The Journal of Immunology
J Immunol (2006) 176 (8): 4699–4705.
DOI: https://doi.org/10.4049/jimmunol.176.8.4699
Published: 15 April 2006
View article titled, Motif Inference Reveals Optimal CTL Epitopes Presented by HLA Class I Alleles Highly Prevalent in Southern Africa
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Journal Articles

Impact of HLA-B Alleles, Epitope Binding Affinity, Functional Avidity, and Viral Coinfection on the Immunodominance of Virus-Specific CTL Responses

Florian Bihl, Nicole Frahm, Loriana Di Giammarino, John Sidney, Mina John, Karina Yusim, Tonia Woodberry, Kaori Sango, Hannah S. Hewitt, Leah Henry, Caitlyn H. Linde, John V. Chisholm, III, Tauheed M. Zaman, Eunice Pae, Simon Mallal, Bruce D. Walker, Alessandro Sette, Bette T. Korber, David Heckerman, Christian Brander
Journal: The Journal of Immunology
J Immunol (2006) 176 (7): 4094–4101.
DOI: https://doi.org/10.4049/jimmunol.176.7.4094
Published: 01 April 2006
View article titled, Impact of HLA-B Alleles, Epitope Binding Affinity, Functional Avidity, and Viral Coinfection on the Immunodominance of Virus-Specific CTL Responses
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Includes: Supplementary data
Journal Articles

Broad Repertoire of the CD4+ Th Cell Response in Spontaneously Controlled Hepatitis C Virus Infection Includes Dominant and Highly Promiscuous Epitopes

Julian Schulze zur Wiesch, Georg M. Lauer, Cheryl L. Day, Arthur Y. Kim, Kei Ouchi, Jared E. Duncan, Alysse G. Wurcel, Joerg Timm, Andrea M. Jones, Bianca Mothe, Todd M. Allen, Barbara McGovern, Lia Lewis-Ximenez, John Sidney, Alessandro Sette, Raymond T. Chung, Bruce D. Walker
Journal: The Journal of Immunology
J Immunol (2005) 175 (6): 3603–3613.
DOI: https://doi.org/10.4049/jimmunol.175.6.3603
Published: 15 September 2005
View article titled, Broad Repertoire of the CD4<sup>+</sup> Th Cell Response in Spontaneously Controlled Hepatitis C Virus Infection Includes Dominant and Highly Promiscuous Epitopes
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Journal Articles

HIV-1 Viral Escape in Infancy Followed by Emergence of a Variant-Specific CTL Response

Margaret E. Feeney, Yanhua Tang, Katja Pfafferott, Kathleen A. Roosevelt, Rika Draenert, Alicja Trocha, Xu G. Yu, Cori Verrill, Todd Allen, Corey Moore, Simon Mallal, Sandra Burchett, Kenneth McIntosh, Stephen I. Pelton, M. Anne St. John, Rohan Hazra, Paul Klenerman, Marcus Altfeld, Bruce D. Walker, Philip J. R. Goulder
Journal: The Journal of Immunology
J Immunol (2005) 174 (12): 7524–7530.
DOI: https://doi.org/10.4049/jimmunol.174.12.7524
Published: 15 June 2005
View article titled, HIV-1 Viral Escape in Infancy Followed by Emergence of a Variant-Specific CTL Response
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Journal Articles

Neutralizing Antibodies to Adenovirus Serotype 5 Vaccine Vectors Are Directed Primarily against the Adenovirus Hexon Protein

Shawn M. Sumida, Diana M. Truitt, Angelique A. C. Lemckert, Ronald Vogels, Jerome H. H. V. Custers, Marylyn M. Addo, Shahin Lockman, Trevor Peter, Fred W. Peyerl, Michael G. Kishko, Shawn S. Jackson, Darci A. Gorgone, Michelle A. Lifton, Myron Essex, Bruce D. Walker, Jaap Goudsmit, Menzo J. E. Havenga, Dan H. Barouch
Journal: The Journal of Immunology
J Immunol (2005) 174 (11): 7179–7185.
DOI: https://doi.org/10.4049/jimmunol.174.11.7179
Published: 01 June 2005
View article titled, Neutralizing Antibodies to Adenovirus Serotype 5 Vaccine Vectors Are Directed Primarily against the Adenovirus Hexon Protein
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Heat Shock Protein-Mediated Cross-Presentation of Exogenous HIV Antigen on HLA Class I and Class II

Devi SenGupta, Philip J. Norris, Todd J. Suscovich, Mina Hassan-Zahraee, Howell F. Moffett, Alicja Trocha, Rika Draenert, Philip J. R. Goulder, Robert J. Binder, Daniel L. Levey, Bruce D. Walker, Pramod K. Srivastava, Christian Brander
Journal: The Journal of Immunology
J Immunol (2004) 173 (3): 1987–1993.
DOI: https://doi.org/10.4049/jimmunol.173.3.1987
Published: 01 August 2004
View article titled, Heat Shock Protein-Mediated Cross-Presentation of Exogenous HIV Antigen on HLA Class I and Class II
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Journal Articles

Pervasive Influence of Hepatitis C Virus on the Phenotype of Antiviral CD8+ T Cells

Michaela Lucas, Ana L. Vargas-Cuero, Georg M. Lauer, Eleanor Barnes, Christian B. Willberg, Nasser Semmo, Bruce D. Walker, Rodney Phillips, Paul Klenerman
Journal: The Journal of Immunology
J Immunol (2004) 172 (3): 1744–1753.
DOI: https://doi.org/10.4049/jimmunol.172.3.1744
Published: 01 February 2004
View article titled, Pervasive Influence of Hepatitis C Virus on the Phenotype of Antiviral CD8<sup>+</sup> T Cells
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