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Journal Articles

Determining the impact of HLA type and chronic viral infection on peripheral T-cell receptor sharing between unrelated individuals

Sarah Johnson, Spencer Seale, Rachel M Gittelman, Catherine M Sanders, Harlan Robins, Paul Fields
Journal: The Journal of Immunology
J Immunol (2021) 206 (1_Supplement): 14.14.
https://doi.org/10.4049/jimmunol.206.Supp.14.14
Published: 01 May 2021
View article titled, Determining the impact of HLA type and chronic viral infection on peripheral T-cell receptor sharing between unrelated individuals
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Journal Articles

Determining the impact of HLA type and chronic viral infection on peripheral T-cell receptor sharing between unrelated individuals

Sarah Johnson, Rachel M Gittelman, Catherine Sanders, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2020) 204 (1_Supplement): 140.16.
https://doi.org/10.4049/jimmunol.204.Supp.140.16
Published: 01 May 2020
View article titled, Determining the impact of HLA type and chronic viral infection on peripheral T-cell receptor sharing between unrelated individuals
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Journal Articles

Detection and tracking of public, broadly neutralizing antibodies against group 1 and group 2 Influenza A viruses in healthy donors and post-seasonal flu vaccine.

Rachel M Gittelman, Erik Yusko, Catherine M Sanders, Marissa Vignali, Adrian McDermott, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2017) 198 (1_Supplement): 73.4.
https://doi.org/10.4049/jimmunol.198.Supp.73.4
Published: 01 May 2017
View article titled, Detection and tracking of public, broadly neutralizing antibodies against group 1 and group 2 Influenza A viruses in healthy donors and post-seasonal flu vaccine.
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Journal Articles

Ibrutinib Therapy Increases T Cell Repertoire Diversity in Patients with Chronic Lymphocytic Leukemia

Qingsong Yin, Mariela Sivina, Harlan Robins, Erik Yusko, Marissa Vignali, Susan O’Brien, Michael J. Keating, Alessandra Ferrajoli, Zeev Estrov, Nitin Jain, William G. Wierda, Jan A. Burger
Journal: The Journal of Immunology
J Immunol (2017) 198 (4): 1740–1747.
https://doi.org/10.4049/jimmunol.1601190
Published: 15 February 2017
View article titled, Ibrutinib Therapy Increases T Cell Repertoire Diversity in Patients with Chronic Lymphocytic Leukemia
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Includes: Supplementary data
Journal Articles

A scalable multiplex assay enabling assessment of T cell receptor specificity to hundreds of self- and pathogen-derived antigens

Mark Klinger, Ruth Taniguchi, Joyce Hu, Tim Hayes, Tobias Wittkop, Thomas Asbury, Martin Moorhead, Ryan Emerson, Anna Sherwood, Harlan Robins, Malek Faham
Journal: The Journal of Immunology
J Immunol (2016) 196 (1_Supplement): 209.4.
https://doi.org/10.4049/jimmunol.196.Supp.209.4
Published: 01 May 2016
View article titled, A scalable multiplex assay enabling assessment of T cell receptor specificity to hundreds of self- and pathogen-derived antigens
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Achieving Potent Autologous Neutralizing Antibody Responses against Tier 2 HIV-1 Viruses by Strategic Selection of Envelope Immunogens

Ann J. Hessell, Delphine C. Malherbe, Franco Pissani, Sean McBurney, Shelly J. Krebs, Michelle Gomes, Shilpi Pandey, William F. Sutton, Benjamin J. Burwitz, Matthew Gray, Harlan Robins, Byung S. Park, Jonah B. Sacha, Celia C. LaBranche, Deborah H. Fuller, David C. Montefiori, Leonidas Stamatatos, D. Noah Sather, Nancy L. Haigwood
Journal: The Journal of Immunology
J Immunol (2016) 196 (7): 3064–3078.
https://doi.org/10.4049/jimmunol.1500527
Published: 01 April 2016
View article titled, Achieving Potent Autologous Neutralizing Antibody Responses against Tier 2 HIV-1 Viruses by Strategic Selection of Envelope Immunogens
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Includes: Supplementary data
Journal Articles

Recombinant human IL7 enhances naïve and T stem cell memory reconstitution and enhances repertoire diversity following cytotoxic chemotherapy (LYM5P.705)

Hua Zhang, Harlan Robins, Crystal Mackall
Journal: The Journal of Immunology
J Immunol (2015) 194 (1_Supplement): 134.10.
https://doi.org/10.4049/jimmunol.194.Supp.134.10
Published: 01 May 2015
View article titled, Recombinant human IL7 enhances naïve and T stem cell memory reconstitution and enhances repertoire diversity following cytotoxic chemotherapy (LYM5P.705)
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Journal Articles

De novo detection and HLA-association of public T cell responses to Cytomegalovirus using high-throughput immune repertoire sequencing (VIR1P.1134)

Ryan Emerson, William DeWitt, Cindy Desmarais, Mark Rieder, Christopher Carlson, Jenna Gravley, John Hansen, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2015) 194 (1_Supplement): 74.1.
https://doi.org/10.4049/jimmunol.194.Supp.74.1
Published: 01 May 2015
View article titled, De novo detection and HLA-association of public T cell responses to Cytomegalovirus using high-throughput immune repertoire sequencing (VIR1P.1134)
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Journal Articles

High-throughput pairing of T cell receptor alpha and beta sequences (TECH2P.930)

Anna Sherwood, Bryan Howie, Ashley Berkebile, Jan Berka, Ryan Emerson, David Williamson, Michael McCormick, Ilan Kirsch, Marissa Vignali, Mark Rieder, Christopher Carlson, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2015) 194 (1_Supplement): 206.40.
https://doi.org/10.4049/jimmunol.194.Supp.206.40
Published: 01 May 2015
View article titled, High-throughput pairing of T cell receptor alpha and beta sequences (TECH2P.930)
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Journal Articles

Functional IGH V polymorphism is frequent in humans: implications for immunity and vaccination (HUM8P.349)

Chris Carlson, Eline Luning Prak, Jeanne Dagloria, Heidi Utsugi, Christina Chen, Melissa Alvendia, Mark Rieder, Karen Makar, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 185.24.
https://doi.org/10.4049/jimmunol.192.Supp.185.24
Published: 01 May 2014
View article titled, Functional IGH V polymorphism is frequent in humans: implications for immunity and vaccination (HUM8P.349)
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Journal Articles

High-throughput T cell receptor (TCR) sequence tracking reveals clonal intrinsic selection for skin resident T cells in human genital HSV-2 infection (MUC7P.771)

Jia Zhu, Angela Kask, Kurt Diem, Harlan Robins, Anna Wald
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 197.23.
https://doi.org/10.4049/jimmunol.192.Supp.197.23
Published: 01 May 2014
View article titled, High-throughput T cell receptor (TCR) sequence tracking reveals clonal intrinsic selection for skin resident T cells in human genital HSV-2 infection (MUC7P.771)
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Journal Articles

Defining the alloreactive T cell repertoire using high-throughput sequencing of mixed lymphocyte culture (TRAN3P.884)

Ryan Emerson, James Matthew, Harlan Robins, Joseph Leventhal
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 202.23.
https://doi.org/10.4049/jimmunol.192.Supp.202.23
Published: 01 May 2014
View article titled, Defining the alloreactive T cell repertoire using high-throughput sequencing of mixed lymphocyte culture (TRAN3P.884)
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Journal Articles

T cell repertoire renewal following autologous stem cell transplantation for multiple sclerosis (THER3P.879)

Harlan Robins, Paolo Muraro, Sachin Malhotra, Michael Howell, Deborah Phippard, Cindy Desmarais, Alessandra de Paula Alves Sousa, Linda Griffith, Noha Lim, Richard Nash, Laurence Turka
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 136.5.
https://doi.org/10.4049/jimmunol.192.Supp.136.5
Published: 01 May 2014
View article titled, T cell repertoire renewal following autologous stem cell transplantation for multiple sclerosis (THER3P.879)
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Journal Articles

Defining accuracy and sensitivity of T-cell receptor repertoire profiling for monitoring recurrent/persistent disease in patients with mature T-cell neoplasms (TECH1P.857)

Anna Sherwood, Harlan Robins, Jonathan Fromm, Harvey Greisman, Daniel Sabath, Moon-Wook Chung, Caterina Bertucci, Cara Wilcox, Ryan Emerson, Mark Rieder, Brent Wood, David Wu
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 69.25.
https://doi.org/10.4049/jimmunol.192.Supp.69.25
Published: 01 May 2014
View article titled, Defining accuracy and sensitivity of T-cell receptor repertoire profiling for monitoring recurrent/persistent disease in patients with mature T-cell neoplasms (TECH1P.857)
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Journal Articles

A next-gen pipeline for generation, error correction and annotation of high-throughput immunosequencing data (TECH1P.842)

Ryan Emerson, Anna Sherwood, William DeWitt, Bryan Howie, Mark Rieder, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 69.10.
https://doi.org/10.4049/jimmunol.192.Supp.69.10
Published: 01 May 2014
View article titled, A next-gen pipeline for generation, error correction and annotation of high-throughput immunosequencing data (TECH1P.842)
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Journal Articles

Annotation of pseudogenous gene segments by high-throughput sequencing of rearranged lymphocyte receptor loci (TECH1P.844)

Anna Sherwood, Ryan Emerson, David Williamson, Moon-Wook Chung, Harlan Robins, Mark Rieder, Christopher Carlson
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 69.12.
https://doi.org/10.4049/jimmunol.192.Supp.69.12
Published: 01 May 2014
View article titled, Annotation of pseudogenous gene segments by high-throughput sequencing of rearranged lymphocyte receptor loci (TECH1P.844)
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Assessing B lymphocyte clonal diversity and expansion by high-throughput sequencing of rearranged IgH loci from naïve and memory repertoires (IRM8P.708)

Ryan Emerson, William DeWitt, Paul Lindau, Anna Sherwood, David Williamson, Mark Rieder, Moon-Wook Chung, Christopher Carlson, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 127.9.
https://doi.org/10.4049/jimmunol.192.Supp.127.9
Published: 01 May 2014
View article titled, Assessing B lymphocyte clonal diversity and expansion by high-throughput sequencing of rearranged IgH loci from naïve and memory repertoires (IRM8P.708)
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Journal Articles

Despite large clonal expansions of cytotoxic T cells with age and chronic CMV exposure, the underlying repertoire appears completely normal, suggesting that holes in the T cell repertoire are not responsible for immunosenesence (VIR4P.1012)

Rithun Mukherjee, Paul Lindau, Cindy Desmarais, Jeanne DeGloria, Heidi Utsugi, Edus Warren, Stanley Riddell, Karen Makar, Cameron Turtle, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 143.7.
https://doi.org/10.4049/jimmunol.192.Supp.143.7
Published: 01 May 2014
View article titled, Despite large clonal expansions of cytotoxic T cells with age and chronic CMV exposure, the underlying repertoire appears completely normal, suggesting that holes in the T cell repertoire are not responsible for immunosenesence (VIR4P.1012)
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Dynamics of the CD8+ T cell response to a model of acute viral infection (VIR4P.1017)

Ryan Emerson, William DeWitt, Paul Lindau, Cindy Desmarais, Karen Makar, Edus Warren, Juliana McElrath, Anna Wald, Harlan Robins
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 143.12.
https://doi.org/10.4049/jimmunol.192.Supp.143.12
Published: 01 May 2014
View article titled, Dynamics of the CD8+ T cell response to a model of acute viral infection (VIR4P.1017)
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Journal Articles

Identifying lymphoma antigen receptor sequences by immune repertoire profiling (TUM2P.915)

Anna Sherwood, Harlan Robins, Jonathan Fromm, Harvey Greisman, Daniel Sabath, Ryan Emerson, Mark Rieder, Brent Wood, David Wu
Journal: The Journal of Immunology
J Immunol (2014) 192 (1_Supplement): 71.39.
https://doi.org/10.4049/jimmunol.192.Supp.71.39
Published: 01 May 2014
View article titled, Identifying lymphoma antigen receptor sequences by immune repertoire profiling (TUM2P.915)
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