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Journal Articles

IgG epitopes processed and presented by IgG+ B cells induce suppression by human thymic-derived regulatory T cells

Li-En Hsieh, John Sidney, David L. Boyle, Gary S Firestein, Alessandro Sette, Alessandra Franco
Journal: The Journal of Immunology
J Immunol (2021) 206 (1_Supplement): 93.14.
https://doi.org/10.4049/jimmunol.206.Supp.93.14
Published: 01 May 2021
View article titled, IgG epitopes processed and presented by IgG+ B cells induce suppression by human thymic-derived regulatory T cells
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Journal Articles

IgG Epitopes Processed and Presented by IgG+ B Cells Induce Suppression by Human Thymic-Derived Regulatory T Cells

Li-En Hsieh, John Sidney, Jane C. Burns, David L. Boyle, Gary S. Firestein, Yoav Altman, Alessandro Sette, Alessandra Franco
Journal: The Journal of Immunology
J Immunol (2021) 206 (6): 1194–1203.
https://doi.org/10.4049/jimmunol.2001009
Published: 15 March 2021
View article titled, IgG Epitopes Processed and Presented by IgG<sup>+</sup> B Cells Induce Suppression by Human Thymic-Derived Regulatory T Cells
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Includes: Supplementary data
Journal Articles

Impact of Cysteine Residues on MHC Binding Predictions and Recognition by Tumor-Reactive T Cells

Abraham Sachs, Eugene Moore, Zeynep Kosaloglu-Yalcin, Bjoern Peters, John Sidney, Steven A. Rosenberg, Paul F. Robbins, Alessandro Sette
Journal: The Journal of Immunology
J Immunol (2020) 205 (2): 539–549.
https://doi.org/10.4049/jimmunol.1901173
Published: 15 July 2020
View article titled, Impact of Cysteine Residues on MHC Binding Predictions and Recognition by Tumor-Reactive T Cells
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Includes: Supplementary data
Journal Articles

Recognition of Class II MHC Peptide Ligands That Contain β-Amino Acids

Ross W. Cheloha, Andrew W. Woodham, Djenet Bousbaine, Tong Wang, Shi Liu, John Sidney, Alessandro Sette, Samuel H. Gellman, Hidde L. Ploegh
Journal: The Journal of Immunology
J Immunol (2019) 203 (6): 1619–1628.
https://doi.org/10.4049/jimmunol.1900536
Published: 15 September 2019
View article titled, Recognition of Class II MHC Peptide Ligands That Contain β-Amino Acids
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Includes: Supplementary data
Journal Articles

Widespread Tau-Specific CD4 T Cell Reactivity in the General Population

Cecilia S. Lindestam Arlehamn, John Pham, Roy N. Alcalay, April Frazier, Evan Shorr, Chelsea Carpenter, John Sidney, Rekha Dhanwani, Julian Agin-Liebes, Francesca Garretti, Amy W. Amara, David G. Standaert, Elizabeth J. Phillips, Simon A. Mallal, Bjoern Peters, David Sulzer, Alessandro Sette
Journal: The Journal of Immunology
J Immunol (2019) 203 (1): 84–92.
https://doi.org/10.4049/jimmunol.1801506
Published: 01 July 2019
View article titled, Widespread Tau-Specific CD4 T Cell Reactivity in the General Population
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Includes: Supplementary data
Journal Articles

Substitution of alpha aminobutyric acid for cysteine at class I MHC anchor positions can enhance recognition of cancer epitopes

Abraham E Sachs, Bjoern Peters, John Sidney, Alessandro Sette, Steven A Rosenberg, Paul F Robbins
Journal: The Journal of Immunology
J Immunol (2019) 202 (1_Supplement): 134.11.
https://doi.org/10.4049/jimmunol.202.Supp.134.11
Published: 01 May 2019
View article titled, Substitution of alpha aminobutyric acid for cysteine at class I MHC anchor positions can enhance recognition of cancer epitopes
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Journal Articles

Crosseactivity of flaviviruses specific CD8+T cell responses across different viral species

Alba Grifoni, Hannah Voic, John Sidney, Aruna D de Silva, Anna Durbin, Sean A Diehl, Eva Harris, Alessandro Sette, Daniela Weiskopf
Journal: The Journal of Immunology
J Immunol (2019) 202 (1_Supplement): 76.12.
https://doi.org/10.4049/jimmunol.202.Supp.76.12
Published: 01 May 2019
View article titled, Crosseactivity of flaviviruses specific CD8+T cell responses across different viral species
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Journal Articles

Identification of new T Cell Epitopes in the mold aeroallergen Aspergillus fumigatus

Luise Sternberg, Gregory Seumois, Sinu Paul, John Sidney, Véronique MJ Schulten, Alessandro Sette, Pandurangan Vijayanand, Bjoern Peters
Journal: The Journal of Immunology
J Immunol (2019) 202 (1_Supplement): 120.23.
https://doi.org/10.4049/jimmunol.202.Supp.120.23
Published: 01 May 2019
View article titled, Identification of new T Cell Epitopes in the mold aeroallergen <em>Aspergillus fumigatus</em>
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Journal Articles

Characterization of HLA-DP and DQ restricted dengue virus-specific CD4+T cell responses reveals lower magnitude responses associated with a differential pattern of immunodominance as compared to DR restricted responses

Daniela Weiskopf, Alba Grifoni, Michael Angelo, Eugene Moore, John Sidney, Elizabeth J Phillips, Simon Alexander Mallal, Aruna D de Silva, Bjoern Peters, Alessandro Sette
Journal: The Journal of Immunology
J Immunol (2019) 202 (1_Supplement): 140.14.
https://doi.org/10.4049/jimmunol.202.Supp.140.14
Published: 01 May 2019
View article titled, Characterization of HLA-DP and DQ restricted dengue virus-specific CD4+T cell responses reveals lower magnitude responses associated with a differential pattern of immunodominance as compared to DR restricted responses
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Journal Articles

Assessing the impact of neoantigen load on checkpoint blockade efficacy

Zeynep Kosaloglu Yalcin, Angela Frentzen, Ashmitaa Logandha Ramamoorthy Premlal, John Sidney, Jason A Greenbaum, Alessandro Sette, Bjoern Peters
Journal: The Journal of Immunology
J Immunol (2019) 202 (1_Supplement): 70.16.
https://doi.org/10.4049/jimmunol.202.Supp.70.16
Published: 01 May 2019
View article titled, Assessing the impact of neoantigen load on checkpoint blockade efficacy
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Journal Articles

Human natural regulatory T cells recognize peptides of the heavy constant region of immunoglobulins presented by IgG+ B cells

Li-En Hsieh, John Sidney, Negar Behnamfar, Jane C. Burns, David Boyle, Gary S. Firestein, Alessandro Sette, Alessandra Franco
Journal: The Journal of Immunology
J Immunol (2019) 202 (1_Supplement): 57.4.
https://doi.org/10.4049/jimmunol.202.Supp.57.4
Published: 01 May 2019
View article titled, Human natural regulatory T cells recognize peptides of the heavy constant region of immunoglobulins presented by IgG+ B cells
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Journal Articles

Cutting Edge: Transcriptional Profiling Reveals Multifunctional and Cytotoxic Antiviral Responses of Zika Virus–Specific CD8+ T Cells

Alba Grifoni, Priscilla Costa-Ramos, John Pham, Yuan Tian, Sandy L. Rosales, Grégory Seumois, John Sidney, Aruna D. de Silva, Lakshmanane Premkumar, Matthew H. Collins, Mars Stone, Phillip J. Norris, Claudia M. E. Romero, Anna Durbin, Michael J. Ricciardi, Julie E. Ledgerwood, Aravinda M. de Silva, Michael Busch, Bjoern Peters, Pandurangan Vijayanand, Eva Harris, Andrew K. Falconar, Esper Kallas, Daniela Weiskopf, Alessandro Sette
Journal: The Journal of Immunology
J Immunol (2018) 201 (12): 3487–3491.
https://doi.org/10.4049/jimmunol.1801090
Published: 15 December 2018
View article titled, Cutting Edge: Transcriptional Profiling Reveals Multifunctional and Cytotoxic Antiviral Responses of Zika Virus–Specific CD8<sup>+</sup> T Cells
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Includes: Supplementary data
Journal Articles

Bolstering the Number and Function of HSV-1–Specific CD8+ Effector Memory T Cells and Tissue-Resident Memory T Cells in Latently Infected Trigeminal Ganglia Reduces Recurrent Ocular Herpes Infection and Disease

Arif A. Khan, Ruchi Srivastava, Aziz A. Chentoufi, Elizabeth Kritzer, Sravya Chilukuri, Sumit Garg, David C. Yu, Hawa Vahed, Lei Huang, Sabrina A. Syed, Julie N. Furness, Tien T. Tran, Nesburn B. Anthony, Christine E. McLaren, John Sidney, Alessandro Sette, Randolph J. Noelle, Lbachir BenMohamed
Journal: The Journal of Immunology
J Immunol (2017) 199 (1): 186–203.
https://doi.org/10.4049/jimmunol.1700145
Published: 01 July 2017
View article titled, Bolstering the Number and Function of HSV-1–Specific CD8<sup>+</sup> Effector Memory T Cells and Tissue-Resident Memory T Cells in Latently Infected Trigeminal Ganglia Reduces Recurrent Ocular Herpes Infection and Disease
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Includes: Supplementary data
Journal Articles

Using MHC Binding Assays to Investigate HLA-Dependent Drug Directed Immune Responses

Thomas Kaever, Imir G Metushi, Rebecca Pavlos, John Sidney, David A Ostrov, Soren Buus, Alec Redwood, Alessandro Sette, Donald F Hunt, Elizabeth J Phillips, Bjoern Peters
Journal: The Journal of Immunology
J Immunol (2017) 198 (1_Supplement): 55.42.
https://doi.org/10.4049/jimmunol.198.Supp.55.42
Published: 01 May 2017
View article titled, Using MHC Binding Assays to Investigate HLA-Dependent Drug Directed Immune Responses
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Journal Articles

MHC class II tetramers identify apolipoprotein B-specific CD4 T cells in mice and humans

Takayuki Kimura, Kevin Tse, Jacqueline Miller, Sara McArdle, Melanie Vassallo, Dennis Wolf, Livia Baas, Koji Kobiyama, Marc K Jenkins, Eddie A James, William Kwok, David B Hanna, Robert C Kaplan, Howard Strickler, John Sidney, Alessandro Sette, Klaus Ley
Journal: The Journal of Immunology
J Immunol (2017) 198 (1_Supplement): 199.3.
https://doi.org/10.4049/jimmunol.198.Supp.199.3
Published: 01 May 2017
View article titled, MHC class II tetramers identify apolipoprotein B-specific CD4 T cells in mice and humans
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Journal Articles

Cellular immunity patterns of rDEN2Δ30 (Tonga/74) support its suitability as a human DENV challenge strain.

Alba Grifoni, Michael Angelo, John Sidney, Sinu Paul, Bjoern Peters, Aruna D de Silva, Elizabeth J Phillips, Simon Alexander Mallal, Sean A Diehl, Jason Botten, Jonathan E Boyson, Beth D Kirkpatrick, Stephen S Whitehead, Anna Durbin, Alessandro Sette, Daniela Weiskopf
Journal: The Journal of Immunology
J Immunol (2017) 198 (1_Supplement): 199.12.
https://doi.org/10.4049/jimmunol.198.Supp.199.12
Published: 01 May 2017
View article titled, Cellular immunity patterns of rDEN2Δ30 (Tonga/74) support its suitability as a human DENV challenge strain.
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Journal Articles

Immune response in Parkinson’s disease driven by HLA display of α-synuclein peptides

Cecilia S Lindestam Arlehamn, Roy N. Alcalay, Francesca Garretti, Lucien Cote, Ellen Kanter, Julian Agin-Liebes, Christopher Liong, Curtis McMurtrey, William H Hildebrand, Xiabo Mao, Valina Dawson, Ted M Dawson, Carla Oseroff, John Pham, John Sidney, Myles Dillon, Chelsea Carpenter, Daniela Weiskopf, Elizabeth J Phillips, Simon Alexander Mallal, Bjoern Peters, April Frazier, David Sulzer, Alessandro Sette
Journal: The Journal of Immunology
J Immunol (2017) 198 (1_Supplement): 55.26.
https://doi.org/10.4049/jimmunol.198.Supp.55.26
Published: 01 May 2017
View article titled, Immune response in Parkinson’s disease driven by HLA display of α-synuclein peptides
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Journal Articles

Gliadin-Specific CD8+ T Cell Responses Restricted by HLA Class I A*0101 and B*0801 Molecules in Celiac Disease Patients

Stefania Picascia, John Sidney, Alessandra Camarca, Giuseppe Mazzarella, Nicola Giardullo, Luigi Greco, Renata Auricchio, Salvatore Auricchio, Riccardo Troncone, Alessandro Sette, Carmen Gianfrani
Journal: The Journal of Immunology
J Immunol (2017) 198 (5): 1838–1845.
https://doi.org/10.4049/jimmunol.1601208
Published: 01 March 2017
View article titled, Gliadin-Specific CD8<sup>+</sup> T Cell Responses Restricted by HLA Class I A*0101 and B*0801 Molecules in Celiac Disease Patients
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Includes: Supplementary data
Journal Articles

The Length Distribution of Class I–Restricted T Cell Epitopes Is Determined by Both Peptide Supply and MHC Allele–Specific Binding Preference

Thomas Trolle, Curtis P. McMurtrey, John Sidney, Wilfried Bardet, Sean C. Osborn, Thomas Kaever, Alessandro Sette, William H. Hildebrand, Morten Nielsen, Bjoern Peters
Journal: The Journal of Immunology
J Immunol (2016) 196 (4): 1480–1487.
https://doi.org/10.4049/jimmunol.1501721
Published: 15 February 2016
View article titled, The Length Distribution of Class I–Restricted T Cell Epitopes Is Determined by Both Peptide Supply and MHC Allele–Specific Binding Preference
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Includes: Supplementary data
Journal Articles

A Population Response Analysis Approach To Assign Class II HLA-Epitope Restrictions

Sinu Paul, Myles B. C. Dillon, Cecilia S. Lindestam Arlehamn, Huang Huang, Mark M. Davis, Denise M. McKinney, Thomas Jens Scriba, John Sidney, Bjoern Peters, Alessandro Sette
Journal: The Journal of Immunology
J Immunol (2015) 194 (12): 6164–6176.
https://doi.org/10.4049/jimmunol.1403074
Published: 15 June 2015
View article titled, A Population Response Analysis Approach To Assign Class II HLA-Epitope Restrictions
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Includes: Supplementary data