Oligonucleotide primers used in this studya
Primer Sequence (5′→3′) . | Direction . | PCR Product Size (bp) . | Mutant . | Protein (aa) . | ||||
---|---|---|---|---|---|---|---|---|
Primers for pCMV2-flag vector (N-terminally flag-tagged protein expression) | ||||||||
1 CGGAATTCCGGCAGAGCGAACATGGCCCCG | → | 1133 | Wild type | 377 | ||||
2 CGGAATTCGTTGGCCTGGAGGCTAGGT | → | 1085 | N-Δ16 | 361 | ||||
3 CGGAATTCGGTGGCTGCCGCTCGTAAG | → | 992 | N-Δ47 | 330 | ||||
4 CGGAATTCGCTGTACCACACTGCGCGG | → | 924 | N-Δ70 | 307 | ||||
5 CGGAATTCGCAGTACAAGACGTGTCCC | → | 822 | N-Δ103 | 274 | ||||
6 CGGAATTCGTCGTACAGAAAGGTGCCC | → | 704 | N-Δ143 | 244 | ||||
7 CGGAATTCGCCCCTGGAAGAGATCATC | → | 596 | N-Δ179 | 198 | ||||
8 CGGAATTCGCTAAACGAGAAGGAGGCC | → | 500 | N-Δ211 | 166 | ||||
9 CGGAATTCGAATGTGTACCGCACACCC | → | 392 | N-Δ247 | 130 | ||||
10 CGGAATTCGAAGTACATGGGTGCAGCG | → | 302 | N-Δ277 | 100 | ||||
11 CGGAATTCGTGCTAAACGAGAAGGAG | → | 503 | N-Δ226 | 150 | ||||
12 GCGGATCCTGAGAGCCAGTATTTATTG | ← | 630 | CΔ150 | 211 | ||||
13 CGCGGATCCCTAGACATTCAGTGCGCTG | ← |
Primer Sequence (5′→3′) . | Direction . | PCR Product Size (bp) . | Mutant . | Protein (aa) . | ||||
---|---|---|---|---|---|---|---|---|
Primers for pCMV2-flag vector (N-terminally flag-tagged protein expression) | ||||||||
1 CGGAATTCCGGCAGAGCGAACATGGCCCCG | → | 1133 | Wild type | 377 | ||||
2 CGGAATTCGTTGGCCTGGAGGCTAGGT | → | 1085 | N-Δ16 | 361 | ||||
3 CGGAATTCGGTGGCTGCCGCTCGTAAG | → | 992 | N-Δ47 | 330 | ||||
4 CGGAATTCGCTGTACCACACTGCGCGG | → | 924 | N-Δ70 | 307 | ||||
5 CGGAATTCGCAGTACAAGACGTGTCCC | → | 822 | N-Δ103 | 274 | ||||
6 CGGAATTCGTCGTACAGAAAGGTGCCC | → | 704 | N-Δ143 | 244 | ||||
7 CGGAATTCGCCCCTGGAAGAGATCATC | → | 596 | N-Δ179 | 198 | ||||
8 CGGAATTCGCTAAACGAGAAGGAGGCC | → | 500 | N-Δ211 | 166 | ||||
9 CGGAATTCGAATGTGTACCGCACACCC | → | 392 | N-Δ247 | 130 | ||||
10 CGGAATTCGAAGTACATGGGTGCAGCG | → | 302 | N-Δ277 | 100 | ||||
11 CGGAATTCGTGCTAAACGAGAAGGAG | → | 503 | N-Δ226 | 150 | ||||
12 GCGGATCCTGAGAGCCAGTATTTATTG | ← | 630 | CΔ150 | 211 | ||||
13 CGCGGATCCCTAGACATTCAGTGCGCTG | ← |
Primers 1–11 were used as forward primers in combination with primer no. 13 as the reverse primer to generate the indicated mutants. Primers 1 and 12 were used for generating CΔ150. The upstream and downstream primers have EcoRI and BamHI sites, respectively, for facilitating an in-frame cloning of the products into the EcoRI and BamHI sites of pCMV2-falg vector. In the primer sequences, italicized letters represent restriction sites for EcoRI and BamHI; bold letters represent gene-specific sequences.